ionique
Contents:
Nanopore Signal Analysis Framework
API Reference
Guides
Installation for beginners
Install Ionique
Guide for VSCode and Python Installation
ionique
Index
Index
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
I
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
V
_
__init__() (ionique.core.AbstractSegmentTree method)
,
[1]
(ionique.core.MetaSegment method)
,
[1]
(ionique.core.Segment method)
,
[1]
(ionique.cparsers.FastStatSplit method)
,
[1]
(ionique.datatypes.SessionFileManager method)
,
[1]
(ionique.datatypes.TraceFile method)
,
[1]
(ionique.io.AbstractFileReader method)
,
[1]
(ionique.io.EDHReader method)
,
[1]
(ionique.io.OPTReader method)
,
[1]
(ionique.parsers.AutoSquareParser method)
,
[1]
(ionique.parsers.FilterDerivativeSegmenter method)
,
[1]
(ionique.parsers.IVCurveAnalyzer method)
,
[1]
(ionique.parsers.IVCurveParser method)
,
[1]
(ionique.parsers.lambda_event_parser method)
,
[1]
(ionique.parsers.MemoryParse method)
,
[1]
(ionique.parsers.NoiseFilterParser method)
,
[1]
(ionique.parsers.Parser method)
,
[1]
(ionique.parsers.snakebase_parser method)
,
[1]
(ionique.parsers.SpeedyStatSplit method)
,
[1]
(ionique.parsers.SpikeParser method)
,
[1]
(ionique.utils.Filter method)
,
[1]
(ionique.utils.Singleton method)
,
[1]
(ionique.utils.Trimmer method)
,
[1]
A
AbstractFileReader (class in ionique.io)
,
[1]
AbstractSegmentTree (class in ionique.core)
,
[1]
accepted_keywords (ionique.io.AbstractFileReader attribute)
,
[1]
(ionique.io.EDHReader attribute)
,
[1]
(ionique.io.OPTReader attribute)
,
[1]
add_child() (ionique.core.AbstractSegmentTree method)
,
[1]
(ionique.datatypes.SessionFileManager method)
,
[1]
add_children() (ionique.core.AbstractSegmentTree method)
,
[1]
(ionique.datatypes.SessionFileManager method)
,
[1]
analyze() (ionique.parsers.IVCurveAnalyzer method)
,
[1]
AutoSquareParser (class in ionique.parsers)
,
[1]
B
best_single_split() (ionique.cparsers.FastStatSplit method)
,
[1]
(ionique.parsers.SpeedyStatSplit method)
,
[1]
bidirectional (ionique.utils.Filter attribute)
,
[1]
C
children (ionique.core.AbstractSegmentTree attribute)
,
[1]
(ionique.core.Segment attribute)
,
[1]
(ionique.datatypes.TraceFile attribute)
,
[1]
clear_children() (ionique.core.AbstractSegmentTree method)
,
[1]
climb_to_rank() (ionique.core.AbstractSegmentTree method)
,
[1]
current (ionique.core.MetaSegment property)
,
[1]
current_multiplier (ionique.io.AbstractFileReader attribute)
,
[1]
(ionique.io.EDHReader attribute)
,
[1]
(ionique.io.OPTReader attribute)
,
[1]
cutoff_frequency (ionique.utils.Filter attribute)
,
[1]
D
delete() (ionique.core.MetaSegment method)
,
[1]
(ionique.core.Segment method)
,
[1]
(ionique.datatypes.TraceFile method)
,
[1]
duration (ionique.core.MetaSegment property)
,
[1]
E
EDHReader (class in ionique.io)
,
[1]
end (ionique.core.AbstractSegmentTree attribute)
,
[1]
(ionique.core.Segment attribute)
,
[1]
(ionique.datatypes.TraceFile attribute)
,
[1]
ext (ionique.io.AbstractFileReader attribute)
,
[1]
(ionique.io.EDHReader attribute)
,
[1]
(ionique.io.OPTReader attribute)
,
[1]
extract_features() (in module ionique.utils)
,
[1]
F
FastStatSplit (class in ionique.cparsers)
,
[1]
Filter (class in ionique.utils)
,
[1]
filter_method (ionique.utils.Filter attribute)
,
[1]
filter_type (ionique.utils.Filter attribute)
,
[1]
FilterDerivativeSegmenter (class in ionique.parsers)
,
[1]
find_peaks_in_segment() (ionique.io.OPTReader method)
,
[1]
find_peaks_slide_window() (ionique.io.OPTReader method)
,
[1]
from_json() (ionique.core.MetaSegment class method)
,
[1]
(ionique.core.Segment class method)
,
[1]
(ionique.parsers.Parser class method)
,
[1]
G
get_feature() (ionique.core.AbstractSegmentTree method)
,
[1]
get_init_params() (ionique.parsers.Parser class method)
,
[1]
get_name() (ionique.parsers.Parser class method)
,
[1]
get_process_inputs() (ionique.parsers.Parser class method)
,
[1]
get_process_outputs() (ionique.parsers.Parser class method)
,
[1]
get_required_parent_attributes() (ionique.parsers.Parser method)
,
[1]
get_top_parent() (ionique.core.AbstractSegmentTree method)
,
[1]
I
ignored() (in module ionique.core)
,
[1]
ionique
module
ionique.core
module
,
[1]
ionique.cparsers
module
,
[1]
ionique.datatypes
module
,
[1]
ionique.io
module
,
[1]
ionique.parsers
module
,
[1]
ionique.utils
module
,
[1]
IVCurveAnalyzer (class in ionique.parsers)
,
[1]
IVCurveParser (class in ionique.parsers)
,
[1]
L
lambda_event_parser (class in ionique.parsers)
,
[1]
M
max (ionique.core.MetaSegment property)
,
[1]
(ionique.core.Segment property)
,
[1]
mean (ionique.core.MetaSegment property)
,
[1]
(ionique.core.Segment property)
,
[1]
MemoryParse (class in ionique.parsers)
,
[1]
MetaSegment (class in ionique.core)
,
[1]
min (ionique.core.MetaSegment property)
,
[1]
(ionique.core.Segment property)
,
[1]
min_gain (ionique.cparsers.FastStatSplit attribute)
,
[1]
module
ionique
ionique.core
,
[1]
ionique.cparsers
,
[1]
ionique.datatypes
,
[1]
ionique.io
,
[1]
ionique.parsers
,
[1]
ionique.utils
,
[1]
setup_log
N
n (ionique.core.AbstractSegmentTree property)
,
[1]
(ionique.core.Segment property)
,
[1]
newrank (ionique.utils.Trimmer attribute)
,
[1]
NoiseFilterParser (class in ionique.parsers)
,
[1]
O
OPTReader (class in ionique.io)
,
[1]
order (ionique.utils.Filter attribute)
,
[1]
P
pairwise() (in module ionique.cparsers)
,
[1]
(in module ionique.parsers)
,
[1]
parent (ionique.core.AbstractSegmentTree attribute)
,
[1]
(ionique.core.Segment attribute)
,
[1]
(ionique.datatypes.TraceFile attribute)
,
[1]
parse() (ionique.core.AbstractSegmentTree method)
,
[1]
(ionique.cparsers.FastStatSplit method)
,
[1]
(ionique.parsers.AutoSquareParser method)
,
[1]
(ionique.parsers.FilterDerivativeSegmenter method)
,
[1]
(ionique.parsers.IVCurveParser method)
,
[1]
(ionique.parsers.lambda_event_parser method)
,
[1]
(ionique.parsers.MemoryParse method)
,
[1]
(ionique.parsers.NoiseFilterParser method)
,
[1]
(ionique.parsers.Parser method)
,
[1]
(ionique.parsers.snakebase_parser method)
,
[1]
(ionique.parsers.SpeedyStatSplit method)
,
[1]
(ionique.parsers.SpikeParser method)
,
[1]
parse_meta() (ionique.cparsers.FastStatSplit method)
,
[1]
(ionique.parsers.SpeedyStatSplit method)
,
[1]
Parser (class in ionique.parsers)
,
[1]
plot() (ionique.datatypes.TraceFile method)
,
[1]
process_custom_xml() (ionique.io.OPTReader method)
,
[1]
R
rank (ionique.core.AbstractSegmentTree attribute)
,
[1]
(ionique.core.Segment attribute)
,
[1]
(ionique.datatypes.SessionFileManager attribute)
,
[1]
(ionique.datatypes.TraceFile attribute)
,
[1]
(ionique.utils.Trimmer attribute)
,
[1]
read() (ionique.io.AbstractFileReader method)
,
[1]
register_affector() (ionique.datatypes.SessionFileManager method)
,
[1]
relative_end (ionique.core.AbstractSegmentTree property)
,
[1]
relative_slice (ionique.core.AbstractSegmentTree property)
,
[1]
relative_start (ionique.core.AbstractSegmentTree property)
,
[1]
required_parent_attributes (ionique.parsers.AutoSquareParser attribute)
,
[1]
(ionique.parsers.Parser attribute)
,
[1]
(ionique.parsers.SpikeParser attribute)
,
[1]
S
samples_to_remove (ionique.utils.Trimmer attribute)
,
[1]
sampling_frequency (ionique.utils.Filter attribute)
,
[1]
scale() (ionique.core.Segment method)
,
[1]
score_samples() (ionique.cparsers.FastStatSplit method)
,
[1]
Segment (class in ionique.core)
,
[1]
SessionFileManager (class in ionique.datatypes)
,
[1]
set_params() (ionique.parsers.FilterDerivativeSegmenter method)
,
[1]
(ionique.parsers.lambda_event_parser method)
,
[1]
(ionique.parsers.Parser method)
,
[1]
(ionique.parsers.snakebase_parser method)
,
[1]
(ionique.parsers.SpeedyStatSplit method)
,
[1]
setup_log
module
si_eval() (in module ionique.utils)
,
[1]
Singleton (class in ionique.utils)
,
[1]
slice (ionique.core.AbstractSegmentTree property)
,
[1]
snakebase_parser (class in ionique.parsers)
,
[1]
SpeedyStatSplit (class in ionique.parsers)
,
[1]
SpikeParser (class in ionique.parsers)
,
[1]
split_voltage_steps() (in module ionique.utils)
,
[1]
start (ionique.core.AbstractSegmentTree attribute)
,
[1]
(ionique.core.Segment attribute)
,
[1]
(ionique.datatypes.TraceFile attribute)
,
[1]
std (ionique.core.MetaSegment property)
,
[1]
(ionique.core.Segment property)
,
[1]
T
time (ionique.core.MetaSegment property)
,
[1]
to_dict() (ionique.core.MetaSegment method)
,
[1]
(ionique.core.Segment method)
,
[1]
(ionique.parsers.Parser method)
,
[1]
to_json() (ionique.core.MetaSegment method)
,
[1]
(ionique.core.Segment method)
,
[1]
(ionique.parsers.Parser method)
,
[1]
to_meta() (ionique.core.MetaSegment method)
,
[1]
(ionique.core.Segment method)
,
[1]
TraceFile (class in ionique.datatypes)
,
[1]
traverse_to_rank() (ionique.core.AbstractSegmentTree method)
,
[1]
Trimmer (class in ionique.utils)
,
[1]
U
uiTemplate (ionique.parsers.SpeedyStatSplit attribute)
,
[1]
unique_features (ionique.core.MetaSegment attribute)
,
[1]
(ionique.datatypes.SessionFileManager attribute)
,
[1]
V
voltage_multiplier (ionique.io.AbstractFileReader attribute)
,
[1]
(ionique.io.EDHReader attribute)
,
[1]